— From the bench to the batch →
Experiments, QC results and batch records, linked from the start.
Holonyx captures how research, lab testing and manufacturing fit together as the work happens, so nothing is retyped or reconstructed.
Built for the agentic era, from the ground up. Every record already carries its context.
— One platform, every modality →
Built for how your science actually runs.
Small molecule
Research → PD recipe → analytical release testing → electronic batch record → QC.
Explore →Biologics
Protein design to bioprocess to characterization, stability, and Certificate of Analysis.
Explore →Cell & gene therapy
Donor-to-batch chain of identity, guide-RNA / mRNA / plasmid design, EM, potency, release.
Explore →— Why this is hard today →
The instrument is qualified. The method is validated.The number is in a PDF.
Research
The notebook
- Reagent
- Lot 842
- Amount
- 12.5 g
- Scientist
- A. Moreau
Lab & QC
The lab system
- Sample from
- Lot 842
- Purity
- 99.1 %
- Instrument
- HPLC-2
Manufacturing
The batch record
- Material issued
- Lot 842
- Purity
- CoA_842.pdf
- Step status
- Signed
Most companies run disjointed systems for experiments, testing and making products. Each holds part of the story. The joins are fragile, retyped IDs and pasted numbers — simple questions become an afternoon of piecing things together. Critically, the meaning can be lost: what each value was, and the context around it, gets misread between systems and is time-consuming to reassemble.
— What makes Holonyx different →
Record it once. Link it as you go. Trace it any time.
- 1
Recorded once
A lot, a sample or a result is entered one time, at the point where the work is done.
- 2
Linked as the work happens
Each step records what it used and what it produced: made from, tested on, released by.
- 3
Answered by following the links
A question about a batch follows those links, instead of someone matching IDs across files.
Most platforms started as one system and bolted on the others. Holonyx started as the model, built by people who have spent more than two decades on systems for pharma and biotech.
- Knowledge graph
- Research, testing and manufacturing live as one set of linked facts, so there is nothing to reconcile later.
- Ontology
- Domain experts defined what a lot, a method or a batch is, and which links are allowed. It extends to fit your science.
- AI agents
- Meaning and context travel with every record, so your agents can reason and act on it.
What that gives you
One record — not a copy in every tool
Experiments, samples, batches, results, signatures, instrument readings — all connected, live. Nobody waits on an overnight file transfer.
How it works, in plain English →Compliance is built in, not bolted on
Every change is permanently logged, every signature ties to the exact record it approved, and a batch always knows its own status. Audit-ready every day.
How compliance works →Research to release, one thread
Write a procedure once — it runs as an Experiment, a Recipe, or a Batch Record. Nothing re-entered by hand at each handoff.
The continuity story →AI that reads your real data
The assistant works off your actual, current data — not a stale copy that can drift out of date. Same permissions, same audit trail a person's would leave.
How the AI layer works →Your instruments, your network
One connector for chromatography systems and lab instruments, regardless of vendor. A one-way link for instruments that can't go online.
Integration model →Your science, in your own words
Holonyx learns the kinds of things you track, what you call them and how they relate — small molecule or biologic, in-house terms and all — and builds your lab’s own map from that. Nobody force-fits their science into ours.
New here? Plain-English guide →Your data, answered in plain language.
Not a search box over a stale export. The assistant reads the live graph — the same records, the same permissions, the same audit trail a person's query would leave.
| Lot | Material | Expires | Location |
|---|---|---|---|
| RM-8842 | Recombinant Protein A | 2026-09-28 | 14 vials · Cold Room 2 |
| RM-9010 | HPLC Mobile Phase B | 2026-10-02 | 6 bottles · Solvent Cabinet |
| RM-8775 | CHO Culture Media | 2026-10-06 | 3 cases · -20°C Freezer 1 |
— Common questions →
Questions people ask first.
What is Holonyx, in one sentence?
An operating system for scientific work: every experiment, sample, test and batch record lives as one connected, audit-ready record, from a scientist's first result to a manufacturing release.
Is Holonyx an ELN, a LIMS, or a MES?
It does what those three separate systems have traditionally covered — a lab notebook, lab testing and results management, and manufacturing execution — but as one connected record instead of three disconnected ones. We call the three parts Research, Lab & QC, and Manufacturing; underneath, it's a single graph-native system, not an electronic notebook bolted to a lab information system bolted to a manufacturing execution tool.
Who is it built for?
Bench scientists running experiments, QC analysts running tests and releasing lots, and manufacturing teams executing batch records — small molecule, biologics, or cell & gene therapy.
Does it support 21 CFR Part 11?
It is built to support it: a hash-chained, tamper-evident audit trail and record-level electronic signatures are part of the data model itself, not a separate module. Compliance also depends on your own procedures and validation; the compliance page sets out the controls one by one.
See one of your own processes traced from the first experiment to the released batch.
Book a walkthrough